Rujukan Ribonuklease H

  1. ↑ PDB: 1JL1​; Goedken ER, Marqusee S (December 2001). "Native-state energetics of a thermostabilized variant of ribonuclease HI". Journal of Molecular Biology. 314 (4): 863–71. doi:10.1006/jmbi.2001.5184. PMID 11734003.
  2. 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 "Ribonuclease H: the enzymes in eukaryotes". The FEBS Journal. 276 (6): 1494–505. March 2009. doi:10.1111/j.1742-4658.2009.06908.x. PMC 2746905. PMID 19228196.
  3. 1 2 3 "Crystal structure of RNase H3-substrate complex reveals parallel evolution of RNA/DNA hybrid recognition". Nucleic Acids Research. 42 (14): 9285–94. August 2014. doi:10.1093/nar/gku615. PMC 4132731. PMID 25016521.
  4. 1 2 3 4 "Crystal structure of the ribonuclease H domain of HIV-1 reverse transcriptase". Science. 252 (5002): 88–95. April 1991. Bibcode:1991Sci...252...88D. doi:10.1126/science.1707186. PMID 1707186.
  5. 1 2 "Identification and characterization of HIV-specific RNase H by monoclonal antibody". The EMBO Journal. 7 (1): 239–43. January 1988. doi:10.1002/j.1460-2075.1988.tb02805.x. PMC 454263. PMID 2452083.
  6. 1 2 3 4 5 6 7 8 9 10 11 12 13 "Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes". The FEBS Journal. 276 (6): 1482–93. March 2009. doi:10.1111/j.1742-4658.2009.06907.x. PMID 19228197.
  7. 1 2 "The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification". Nucleic Acids Research. 42 (7): 4160–79. April 2014. doi:10.1093/nar/gkt1414. PMC 3985635. PMID 24464998.
  8. 1 2 "Retroviral integrases and their cousins". Current Opinion in Structural Biology. 6 (1): 76–83. February 1996. doi:10.1016/s0959-440x(96)80098-4. PMID 8696976.
  9. ↑ "Thermal and mechanical multistate folding of ribonuclease H". The Journal of Chemical Physics. 131 (23): 235101. December 2009. Bibcode:2009JChPh.131w5101S. doi:10.1063/1.3270167. PMID 20025349.
  10. 1 2 "Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD". The EMBO Journal. 27 (7): 1172–81. April 2008. doi:10.1038/emboj.2008.44. PMC 2323259. PMID 18337749.
  11. ↑ "Direct observation of the three-state folding of a single protein molecule". Science. 309 (5743): 2057–60. September 2005. Bibcode:2005Sci...309.2057C. doi:10.1126/science.1116702. PMID 16179479.
  12. ↑ "A thermodynamic comparison of mesophilic and thermophilic ribonucleases H". Biochemistry. 38 (12): 3831–6. March 1999. doi:10.1021/bi982684h. PMID 10090773.
  13. ↑ "The kinetic folding intermediate of ribonuclease H resembles the acid molten globule and partially unfolded molecules detected under native conditions". Nature Structural Biology. 4 (4): 298–304. April 1997. doi:10.1038/nsb0497-298. PMID 9095198.
  14. ↑ "RNase H activity: structure, specificity, and function in reverse transcription". Virus Research. 134 (1–2): 86–103. June 2008. doi:10.1016/j.virusres.2007.12.007. PMC 2464458. PMID 18261820.
  15. ↑ "Ribonuclease H: properties, substrate specificity and roles in retroviral reverse transcription". The FEBS Journal. 276 (6): 1506–16. March 2009. doi:10.1111/j.1742-4658.2009.06909.x. PMC 2742777. PMID 19228195.
  16. 1 2 "Making and breaking nucleic acids: two-Mg2+-ion catalysis and substrate specificity". Molecular Cell. 22 (1): 5–13. April 2006. doi:10.1016/j.molcel.2006.03.013. PMID 16600865.
  17. ↑ "Molecular diversities of RNases H". Journal of Bioscience and Bioengineering. 88 (1): 12–9. January 1999. doi:10.1016/s1389-1723(99)80168-6. PMID 16232566.
  18. ↑ "PCNA directs type 2 RNase H activity on DNA replication and repair substrates". Nucleic Acids Research. 39 (9): 3652–66. May 2011. doi:10.1093/nar/gkq980. PMC 3089482. PMID 21245041.
  19. ↑ "The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects". The Journal of Biological Chemistry. 286 (12): 10540–50. March 2011. doi:10.1074/jbc.M110.181974. PMC 3060507. PMID 21177858.
  20. ↑ "RNase H enables efficient repair of R-loop induced DNA damage". eLife. 5: e20533. December 2016. doi:10.7554/eLife.20533. PMC 5215079. PMID 27938663.
  21. 1 2 "Viable RNaseH1 knockout mice show RNaseH1 is essential for R loop processing, mitochondrial and liver function". Nucleic Acids Research. 44 (11): 5299–312. June 2016. doi:10.1093/nar/gkw350. PMC 4914116. PMID 27131367. Unknown parameter |displayauthors= ignored (bantuan)
  22. 1 2 "The absence of ribonuclease H1 or H2 alters the sensitivity of Saccharomyces cerevisiae to hydroxyurea, caffeine and ethyl methanesulphonate: implications for roles of RNases H in DNA replication and repair". Genes to Cells. 5 (10): 789–802. October 2000. doi:10.1046/j.1365-2443.2000.00373.x. PMID 11029655.
  23. ↑ "Failure to produce mitochondrial DNA results in embryonic lethality in Rnaseh1 null mice". Molecular Cell. 11 (3): 807–15. March 2003. doi:10.1016/s1097-2765(03)00088-1. PMID 12667461.
  24. 1 2 "RNASEH1 Mutations Impair mtDNA Replication and Cause Adult-Onset Mitochondrial Encephalomyopathy". American Journal of Human Genetics. 97 (1): 186–93. July 2015. doi:10.1016/j.ajhg.2015.05.013. PMC 4572567. PMID 26094573. Unknown parameter |displayauthors= ignored (bantuan)
  25. 1 2 3 Hollis T, Shaban NM (2011-01-01). "Structure and Function of RNase H Enzymes". Dalam Nicholson AW (penyunting). Ribonucleases. Nucleic Acids and Molecular Biology. Springer Berlin Heidelberg. m/s. 299–317. doi:10.1007/978-3-642-21078-5_12. ISBN 978-3-642-21077-8.
  26. 1 2 3 "Contributions of the two accessory subunits, RNASEH2B and RNASEH2C, to the activity and properties of the human RNase H2 complex". Nucleic Acids Research. 37 (1): 96–110. January 2009. doi:10.1093/nar/gkn913. PMC 2615623. PMID 19015152. Unknown parameter |displayauthors= ignored (bantuan)
  27. 1 2 3 "Ribonuclease H2 in health and disease". Biochemical Society Transactions. 42 (4): 717–25. August 2014. doi:10.1042/BST20140079. PMID 25109948.
  28. ↑ "RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability". Molecular Cell. 44 (6): 978–88. December 2011. doi:10.1016/j.molcel.2011.10.017. PMC 3271842. PMID 22195970.
  29. ↑ "Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I". Science. 332 (6037): 1561–4. June 2011. Bibcode:2011Sci...332.1561K. doi:10.1126/science.1205016. PMC 3380281. PMID 21700875. Unknown parameter |displayauthors= ignored (bantuan)
  30. 1 2 3 "Identification of the genes encoding Mn2+-dependent RNase HII and Mg2+-dependent RNase HIII from Bacillus subtilis: classification of RNases H into three families". Biochemistry. 38 (2): 605–18. January 1999. doi:10.1021/bi982207z. PMID 9888800.
  31. 1 2 3 "Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes". BMC Evolutionary Biology. 7: 128. July 2007. doi:10.1186/1471-2148-7-128. PMC 1950709. PMID 17663799.
  32. 1 2 "Evidence for a dual functional role of a conserved histidine in RNA·DNA heteroduplex cleavage by human RNase H1". FEBS Journal. 279 (24): 4492–500. December 2012. doi:10.1111/febs.12035. PMC 3515698. PMID 23078533.
  33. ↑ "Calcium inhibition of ribonuclease H1 two-metal ion catalysis". Journal of the American Chemical Society. 136 (8): 3137–44. February 2014. doi:10.1021/ja411408x. PMC 3985467. PMID 24499076.
  34. 1 2 "The Role of Conserved Residues in the DEDDh Motif: the Proton-Transfer Mechanism of HIV-1 RNase H". ACS Catalysis. 11 (13): 7915–7927. 16 June 2021. doi:10.1021/acscatal.1c01493.
  35. ↑ "A stepwise model for double-stranded RNA processing by ribonuclease III". Mol Microbiol. 67 (1): 143–54. January 2008. doi:10.1111/j.1365-2958.2007.06032.x. PMID 18047582.
  36. ↑ "Cation trafficking propels RNA hydrolysis". Nature Structural & Molecular Biology. 25 (8): 715–721. August 2019. doi:10.1038/s41594-018-0099-4. PMC 6110950. PMID 30076410.
  37. ↑ "Genomic organization of the human endogenous retrovirus HERV-K(HML-2.HOM) (ERVK6) on chromosome 7". Genomics. 72 (3): 314–20. March 2001. doi:10.1006/geno.2000.6488. PMID 11401447.
  38. ↑ "Convergence of retrotransposons in oomycetes and plants". Mobile DNA. 8 (1): 4. 14 March 2017. doi:10.1186/s13100-017-0087-y. PMC 5348765. PMID 28293305.
  39. ↑ "Convergent evolution of ribonuclease h in LTR retrotransposons and retroviruses". Molecular Biology and Evolution. 32 (5): 1197–207. May 2015. doi:10.1093/molbev/msv008. PMC 4408406. PMID 25605791.
  40. ↑ "Ribonuclease H evolution in retrotransposable elements". Cytogenetic and Genome Research. 110 (1–4): 392–401. 2005. doi:10.1159/000084971. PMID 16093691.
  41. ↑ "The structural and biochemical characterization of human RNase H2 complex reveals the molecular basis for substrate recognition and Aicardi-Goutières syndrome defects". The Journal of Biological Chemistry. 286 (12): 10540–50. March 2011. doi:10.1074/jbc.M110.181974. PMC 3060507. PMID 21177858.
  42. ↑ "Aicardi-Goutieres syndrome". British Medical Bulletin. 89: 183–201. 2009. doi:10.1093/bmb/ldn049. PMID 19129251.
  43. 1 2 "Aicardi-Goutières syndrome and the type I interferonopathies". Nature Reviews. Immunology. 15 (7): 429–40. July 2015. doi:10.1038/nri3850. PMID 26052098.
  44. ↑ "Crystal structure of HIV-1 reverse transcriptase in complex with a polypurine tract RNA:DNA". The EMBO Journal. 20 (6): 1449–61. March 2001. doi:10.1093/emboj/20.6.1449. PMC 145536. PMID 11250910. Unknown parameter |displayauthors= ignored (bantuan)
  45. ↑ "Molecular biology of hepatitis B virus infection". Virology. 479–480: 672–86. May 2015. doi:10.1016/j.virol.2015.02.031. PMC 4424072. PMID 25759099.
  46. ↑ Moelling K, Broecker F, Kerrigan JE (2014-01-01). "RNase H: Specificity, Mechanisms of Action, and Antiviral Target". Dalam Vicenzi E, Poli G (penyunting). Human Retroviruses. Methods in Molecular Biology. 1087. Humana Press. m/s. 71–84. doi:10.1007/978-1-62703-670-2_7. ISBN 978-1-62703-669-6. PMID 24158815.
  47. ↑ "Insight into the mechanism of the stabilization of moloney murine leukaemia virus reverse transcriptase by eliminating RNase H activity". Bioscience, Biotechnology, and Biochemistry. 74 (2): 440–2. February 2010. doi:10.1271/bbb.90777. PMID 20139597.
  48. ↑ "Murine leukemia virus reverse transcriptase: structural comparison with HIV-1 reverse transcriptase". Virus Research. 134 (1–2): 186–202. June 2008. doi:10.1016/j.virusres.2008.01.001. PMC 2443788. PMID 18294720.
  49. 1 2 Nowotny M, Figiel M (2013-01-01). "The RNase H Domain: Structure, Function and Mechanism". Dalam LeGrice S, Gotte M (penyunting). Human Immunodeficiency Virus Reverse Transcriptase. Springer New York. m/s. 53–75. doi:10.1007/978-1-4614-7291-9_3. ISBN 978-1-4614-7290-2.
  50. 1 2 "HIV-1 Ribonuclease H: Structure, Catalytic Mechanism and Inhibitors". Viruses. 2 (4): 900–26. April 2010. doi:10.3390/v2040900. PMC 3185654. PMID 21994660.
  51. ↑ "Uncovering the complexities of retroviral ribonuclease H reveals its potential as a therapeutic target". AIDS Reviews. 4 (4): 183–94. 2002. PMID 12555693.
  52. ↑ "HIV-1 RT-associated RNase H function inhibitors: Recent advances in drug development". Current Medicinal Chemistry. 17 (26): 2837–53. 2010. doi:10.2174/092986710792065045. PMID 20858167.
  53. ↑ "Recent progress in the research of small molecule HIV-1 RNase H inhibitors". Current Medicinal Chemistry. 21 (17): 1956–67. June 2014. doi:10.2174/0929867321666140120121158. PMID 24438523.
  54. ↑ "Characters of very ancient proteins". Biochemical and Biophysical Research Communications. 366 (3): 607–11. February 2008. doi:10.1016/j.bbrc.2007.12.014. PMID 18073136. Unknown parameter |displayauthors= ignored (bantuan)
  55. ↑ "Evolutionary history of the TBP-domain superfamily". Nucleic Acids Research. 41 (5): 2832–45. March 2013. doi:10.1093/nar/gkt045. PMC 3597702. PMID 23376926.
  56. 1 2 3 Nichols NM, Yue D (2001-01-01). Ribonucleases. Current Protocols in Molecular Biology. Chapter 3. John Wiley & Sons, Inc. m/s. Unit3.13. doi:10.1002/0471142727.mb0313s84. ISBN 978-0-471-14272-0. PMID 18972385.
  57. ↑ "A non-PCR SPR platform using RNase H to detect MicroRNA 29a-3p from throat swabs of human subjects with influenza A virus H1N1 infection". The Analyst. 140 (13): 4566–75. July 2015. Bibcode:2015Ana...140.4566L. doi:10.1039/C5AN00679A. PMID 26000345. Unknown parameter |displayauthors= ignored (bantuan)
  58. ↑ "Direct detection of genomic DNA by enzymatically amplified SPR imaging measurements of RNA microarrays". Journal of the American Chemical Society. 126 (13): 4086–7. April 2004. CiteSeerX 10.1.1.475.1922. doi:10.1021/ja039823p. PMID 15053580.
  59. ↑ "RNase H-dependent PCR (rhPCR): improved specificity and single nucleotide polymorphism detection using blocked cleavable primers". BMC Biotechnology. 11: 80. August 2011. doi:10.1186/1472-6750-11-80. PMC 3224242. PMID 21831278.
  60. ↑ "Enzyme from calf thymus degrading the RNA moiety of DNA-RNA Hybrids: effect on DNA-dependent RNA polymerase". Science. 166 (3903): 393–5. October 1969. Bibcode:1969Sci...166..393S. doi:10.1126/science.166.3903.393. PMID 5812039.
  61. ↑ "Ribonuclease H. An enzyme degrading the RNA moiety of DNA-RNA hybrids". European Journal of Biochemistry. 14 (2): 278–83. June 1970. doi:10.1111/j.1432-1033.1970.tb00287.x. PMID 5506170.
  62. ↑ "Ribonuclease H (hybrid) in Escherichia coli. Identification and characterization". The Journal of Biological Chemistry. 248 (7): 2621–4. April 1973. doi:10.1016/S0021-9258(19)44152-5. PMID 4572736.
  63. ↑ "Association of viral reverse transcriptase with an enzyme degrading the RNA moiety of RNA-DNA hybrids". Nature. 234 (51): 240–3. December 1971. doi:10.1038/newbio234240a0. PMID 4331605.
  64. ↑ "Ribonuclease H: a ubiquitous activity in virions of ribonucleic acid tumor viruses". Journal of Virology. 10 (6): 1136–42. December 1972. doi:10.1128/jvi.10.6.1136-1142.1972. PMC 356594. PMID 4118867.
  65. ↑ "Distinct ribonuclease H activities in calf thymus". European Journal of Biochemistry. 52 (1): 179–90. March 1975. doi:10.1111/j.1432-1033.1975.tb03985.x. PMID 51794.
  66. ↑ "DNA sequence of the gene coding for Escherichia coli ribonuclease H". The Journal of Biological Chemistry. 258 (2): 1276–81. January 1983. doi:10.1016/S0021-9258(18)33189-2. PMID 6296074.
  67. ↑ "Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB gene". Proceedings of the National Academy of Sciences of the United States of America. 87 (21): 8587–91. November 1990. Bibcode:1990PNAS...87.8587I. doi:10.1073/pnas.87.21.8587. PMC 55002. PMID 2172991.
  68. ↑ Crouch RJ, Arudchandran A, Cerritelli SM (2001-01-01). "RNase H1 of Saccharomyces cerevisiae: methods and nomenclature". Ribonucleases - Part A. Methods in Enzymology. 341. m/s. 395–413. doi:10.1016/s0076-6879(01)41166-9. ISBN 978-0-12-182242-2. PMID 11582793.
  69. ↑ "Cloning of the cDNA encoding the large subunit of human RNase HI, a homologue of the prokaryotic RNase HII". Proceedings of the National Academy of Sciences of the United States of America. 95 (22): 12872–7. October 1998. Bibcode:1998PNAS...9512872F. doi:10.1073/pnas.95.22.12872. PMC 23637. PMID 9789007.
  70. ↑ "Yeast RNase H(35) is the counterpart of the mammalian RNase HI, and is evolutionarily related to prokaryotic RNase HII". FEBS Letters. 421 (1): 23–6. January 1998. doi:10.1016/s0014-5793(97)01528-7. PMID 9462832.
  71. ↑ "RNase H2 of Saccharomyces cerevisiae is a complex of three proteins". Nucleic Acids Research. 32 (2): 407–14. 2004-01-01. doi:10.1093/nar/gkh209. PMC 373335. PMID 14734815.